Index

A

angle_dif() (in module bouter.angles)

angle_mean() (in module bouter.angles)

B

bandpass() (in module bouter.utilities) behavior_dt() (bouter.experiment.Experiment property) behavior_log() (bouter.experiment.Experiment property) bout_stats() (in module bouter.bout_stats) bouter module bouter.angles module bouter.bout_stats module bouter.decorators module bouter.descriptors module bouter.df_utilities module bouter.embedded module bouter.experiment module

bouter.free module bouter.multisession_exp module bouter.tests module bouter.tests.conftest module bouter.tests.test_angle_utils module bouter.tests.test_bouter module bouter.tests.test_embedded module bouter.tests.test_free module bouter.tests.test_utilities module bouter.utilities module

C

cache_results() (in module bouter.decorators) calc_vel() (in module bouter.utilities) camera_px_in_mm() (bouter.free.FreelySwimmingExperiment property) clear_cache() (bouter.experiment.Experiment method) compute_velocity() (bouter.free.FreelySwimmingExperiment method) compute_vigor() (bouter.embedded.EmbeddedExperiment method)

copy_to_dir() (bouter.experiment.Experiment method) corrupt_tail_matrix() (in module bouter.tests.test_embedded) (in module bouter.tests.test_free) cossin() (in module bouter.angles) count_peaks_between() (in module bouter.bout_stats) crop() (in module bouter.utilities)

D

deprecated() (in module bouter.decorators)

E

embedded_exp_path() (in module bouter.tests.conftest) EmbeddedExperiment (class in bouter.embedded)

estimator_log() (bouter.experiment.Experiment property) Experiment (class in bouter.experiment) extract_segments_above_threshold() (in module bouter.utilities)

F

fast_corrcoef() (in module bouter.utilities) fast_pearson() (in module bouter.utilities) file_list() (bouter.experiment.Experiment property) fill_out_segments() (in module bouter.utilities)

fish_id() (bouter.experiment.Experiment property) freely_swimming_exp_path() (in module bouter.tests.conftest) FreelySwimmingExperiment (class in bouter.free) full_name() (bouter.experiment.Experiment property)

G

get_bout_properties() (bouter.embedded.EmbeddedExperiment method) (bouter.free.FreelySwimmingExperiment method) get_bouts() (bouter.embedded.EmbeddedExperiment method) (bouter.experiment.Experiment method) (bouter.free.FreelySwimmingExperiment method)

get_method_default_kwargs() (in module bouter.decorators) get_n_segments() (in module bouter.df_utilities) get_n_segments_embedded() (in module bouter.df_utilities)

I

invalidate_cache() (bouter.experiment.Experiment method)

L

load_folder() (in module bouter)

load_session_log() (bouter.multisession_exp.MultiSessionExperiment method) log_dt() (in module bouter.utilities)

M

mean_smooth() (in module bouter.utilities) merge_bouts() (in module bouter.utilities) module bouter bouter.angles bouter.bout_stats bouter.decorators bouter.descriptors bouter.df_utilities bouter.embedded bouter.experiment bouter.free bouter.multisession_exp bouter.tests bouter.tests.conftest bouter.tests.test_angle_utils bouter.tests.test_bouter bouter.tests.test_embedded bouter.tests.test_free bouter.tests.test_utilities bouter.utilities

MultiSessionExperiment (class in bouter.multisession_exp)

N

n_fish() (bouter.free.FreelySwimmingExperiment property) n_missing_segments() (in module bouter.utilities)

n_tail_segments() (bouter.embedded.EmbeddedExperiment property) (bouter.free.FreelySwimmingExperiment property) nan_isolated() (in module bouter.utilities)

P

params_filename() (bouter.experiment.Experiment property) polynomial_tail_coefficients() (bouter.embedded.EmbeddedExperiment method) (in module bouter.utilities) polynomial_tailsum() (bouter.embedded.EmbeddedExperiment method) (in module bouter.utilities)

predictive_tail_fill() (in module bouter.utilities) processing_params() (bouter.experiment.Experiment property) protocol_name() (bouter.experiment.Experiment property) protocol_parameters() (bouter.experiment.Experiment property) protocol_version() (bouter.experiment.Experiment property)

Q

quantize_directions() (in module bouter.angles)

R

reconstruct_missing_segments() (bouter.embedded.EmbeddedExperiment method) (bouter.free.FreelySwimmingExperiment method) reduce_to_pi() (in module bouter.angles) reliability() (in module bouter.utilities)

resample() (in module bouter.utilities) revert_segment_filling() (in module bouter.utilities) root_sid_from_path() (in module bouter.experiment) rot_mat() (in module bouter.angles)

S

session_start_tstamps() (bouter.multisession_exp.MultiSessionExperiment method) smooth_tail_angles() (in module bouter.angles) smooth_tail_angles_series() (in module bouter.angles)

stim_end_times() (bouter.experiment.Experiment property) stim_start_times() (bouter.experiment.Experiment property) stimulus_log() (bouter.experiment.Experiment property) stimulus_starts_ends() (bouter.experiment.Experiment method)

T

tail_column_names() (in module bouter.df_utilities) tail_columns() (bouter.embedded.EmbeddedExperiment property) (bouter.free.FreelySwimmingExperiment property) test_bout_extraction() (in module bouter.tests.test_free) test_bout_summary() (in module bouter.tests.test_free) test_class_instantiation() (in module bouter.tests.test_bouter) test_class_properties() (in module bouter.tests.test_bouter) test_class_simple_properties() (in module bouter.tests.test_embedded) test_compute_velocity() (in module bouter.tests.test_free) test_continue_curvature() (in module bouter.tests.test_utilities) test_logs_loading() (in module bouter.tests.test_bouter) test_n_fish_extraction() (in module bouter.tests.test_free)

test_n_segment_extraction() (in module bouter.tests.test_free) test_quantize() (in module bouter.tests.test_angle_utils) test_segment_extraction() (in module bouter.tests.test_utilities) test_tail_fix_function_real_data() (in module bouter.tests.test_embedded) test_tail_fixing_experiment() (in module bouter.tests.test_embedded) (in module bouter.tests.test_free) test_tail_fixing_revert() (in module bouter.tests.test_embedded) (in module bouter.tests.test_free) test_vigor_and_bouts() (in module bouter.tests.test_embedded) test_warning_raise() (in module bouter.tests.test_bouter) transform_affine() (in module bouter.angles) transform_affine_point() (in module bouter.angles)

U

update_processing_params() (bouter.experiment.Experiment method)